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Software for labs
that quantify.

MRMpipe automates peak integration and review for targeted LC/GC-MS. ProteoCore runs your lab's proteomics pipeline and centralizes data storage.

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MRMpipe

Targeted LC/GC-MS, analysed end to end

MRMpipe reads raw vendor files, picks your analyte peaks, whether metabolites, lipids, PFAS or peptides, and returns validated results. Machine learning flags the analytes that need a human eye. It remembers your molecule-specific methods and adapts to your review.

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ProteoCore

The lab's proteomics pipeline, in one place

DDA, DIA and targeted runs processed automatically, results in one central database, open to the whole lab from anywhere.

Explore ProteoCore

The problem

Peak review still happens one sample at a time.

Every analyte in every injection is integrated and checked by hand. The decision an analyst makes on one peak does not carry to the next sample, and nothing carries to the next batch. The work is the same every plate, and it depends on who is doing it.

Butyrylcarnitine · reviewed once · 15 injections of a later batch behind it
Fifteen injections of butyrylcarnitine from a later batch stacked behind each other in absolute counts, the integrated peak coloured on each trace and the rest grey; the front trace in blue is the peak the analyst reviewed.

A 900-sample cohort

3 days

reviewed by hand

3 minutes

to process with MRMpipe

The analyst then reviews only the analytes the model is unsure about. Same rules for every sample, every batch.

What changes

Robust scores, faster batches, less training.

  • Every analyte is scored the same way, whoever runs the batch.
  • Recurring analytes get faster: each molecule's method and your past decisions are remembered.
  • Technicians skip months of learning routine review and are productive from the first batch.

Why it works

Every analyte is modelled, scored and remembered.

Manual integration varies between analysts and starts from nothing every batch. MRMpipe fits every peak with the same model, checks it against the rest of the batch, and carries each molecule's settings and your review decisions into the next run.

  1. 01

    Detect and fit

    Each peak is located and fitted with its tail, so overlapping compounds are separated and the true area is recovered.

  2. 02

    Check across the batch

    Retention time, peak shape and ion ratios are compared across all samples. Drift and outliers are flagged.

  3. 03

    Score, flag, learn

    A trained model scores each analyte and flags the uncertain ones for review. Your decisions and per-molecule settings are kept for the next batch.

Read the technical overview
Deconvolution · Androstenedione / Testosterone · 289.2 → 97.1
2.102.202.302.402.50 Retention time (min) Androstenedione · 2.27 Testosterone · 2.31
Observed trace Fitted component A Fitted component B
Two co-eluting steroids that a threshold integrator reports as one peak. BEMG fitting recovers each area and a correct ion ratio.

Have a batch to process, or a workflow to fix?

Send a test batch and we'll return a full MRMpipe report. Or describe the system your lab is missing and we'll scope it with you.

Request a pilot batch Contact us

Prefer email? contact@quantivum.com