🔬 Cloud Peptide Repository
Multi-tenant database that stores >50 k LC-MS peptide panels with CV / RT / IM metadata and built-in REST + GraphQL.
Projects & Case-Studies
A quick tour of what we’re building right now — plus a few battle-tested tools already helping labs world-wide.
🚧 Active Builds (2025)
🤖 LLMs for Scientific SOPs
Fine-tuning open-weights models to answer QA queries and auto-generate check-lists from SOP & aviation manuals.
📈 SVM for Gene-Treatment Signals
Cross-cohort SVM pipeline that flags gene signatures predictive of drug response in multi-omics trials.
🧪 Desktop Peptide QC Tool
Electron + Python app that verifies presence / purity of synthetic peptides in minutes — ideal for routine QC before shipping.
✅ Flagship Deliveries
🧬 MHCvalidator
ML-based rescoring of immunopeptidomics datasets.
Detects low-confidence PSMs using SVM + feature engineering.
Nature Communications, 2024
📊 MhcVizPipe
Interactive QC dashboard for immunopeptidomics experiments.
Visualizes allele coverage, contamination and technical reproducibility.
Part of MHCvalidator suite
🧬 RHybridFinder (R/Bioconductor)
R package for detecting hybrid HLA ligands in MS data. Efficient scan of open-search results and known proteome. Available on CRAN.
📂 SysQuant
PostgreSQL + Django platform for MRM/PRM proteomics. Enables peptide QC, replicate review, and export to Skyline.
🔄 Phosphoproteome Dynamics
Fuzzy c-means clustering of stress-induced phosphoproteomes.
Time-series resolved signatures of kinase activity in yeast.
Mol Syst Biol, 2015 – PMID: 26040289
✈️ AirlineContract.com
Semantic + keyword hybrid search for aviation work agreements.
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Full publication list available on PubMed.